miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48739726|gb|CO070245.1|CO070245 AGAGATATAATTGAAAGAAAAGAAAAATGGTTCTGCTAGAGAAACTTTGGGATGATGTAGTGGCCGGACCTCAACCGGAA
CGTGGCCTTGGCCGGCTGAGGAAGATCACAACCACCCCACCCTTGTCCACCAAAGATGAGGCTTCATCAATGGCGATGCC
GACGAGTCCGACGACACCTGGGACACCATCGACGCCGGTGTCGGCTCGTAGGGACAACGTGTGGAGGAGCGTGTTCAATC
CAGGTAGCAACCTTGCAACCAAAGGTATTGGCGCTGAAGTTTTCGACAAGCCTCAACCTAACTCTCCTACTGTTTATGAC
TGGTTCGTACAGATTTTTTTTTCTTGTTCAGTTATTTGCATGCATGCTTGCTTGGATAATTGGATATATATAAGTGGGAC
TTTGATTTTGCTTTTTGGATGTTTGTGATCCCCATCTGTTTGGTTGCTGAGAAAATTAATCATAGAAGAGTCGTATATAA
ATATTAACCAGGTGTTTTGGAATTTGGATTCTTTTTAATATATAGTACTAAAATGATGAATTTTTCAAAAAGGAAGCCTC
AAAAACTTTCCTGTTTGTGTGTGTTTTTTTTTCTAACGTTTTCTCAGCAACCAAACGGAGGCTCAGAGACAGATCATGCA
GGANAACTTGGCTCTTTGTTTGGTAGCTGCGTGGAAATAACAGTATGCTGTAATTATTACACTAATCCATTTATAAGCTT
TTATTTTTAATTATTCTTGTTTATTTACTATAAGATGATAAATAACCAAAGA




Most similar to sp|Q05349|12KD_FRAAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragaria
           ananassa PE=2 SV=1
          Length = 111

 Score =  114 bits (285), Expect = 7e-25
 Identities = 55/99 (55%), Positives = 65/99 (65%)
 Frame = +3

Query: 27  MVLLEKLWDDVVAGPQPERGLGRLRKITTTPPLSTKDEXXXXXXXXXXXXXXXXXXXXXX 206
           MVLL+KLWDD+VAGPQPERGLG LRK+     L  + E                      
Sbjct: 1   MVLLDKLWDDIVAGPQPERGLGMLRKVPQPLNLKDEGESSKITMPTTPTTPVTPTTPISA 60

Query: 207 RRDNVWRSVFNPGSNLATKGIGAEVFDKPQPNSPTVYDW 323
           R+DNVWRSVF+PGSNL++K +G +VFD PQPNSPTVYDW
Sbjct: 61  RKDNVWRSVFHPGSNLSSKTMGNQVFDSPQPNSPTVYDW 99